PH01000759G0180's details annotation
1.Annotation
ICBR annotation: homeobox protein knotted-1, putative, expressed
Blast result AT1G62990 : 7.00E-114
Blast annotation: KNOTTED-like homeobox of Arabidopsis thaliana 7
2.Location
Scaffold: PH01000759
Strand: -
| Region | Start | End |
| gene | 130991 | 139231 |
| mRNA | 130991 | 139231 |
| exon | 130991 | 131305 |
| exon | 131441 | 131574 |
| exon | 131867 | 131998 |
| exon | 135800 | 135990 |
| exon | 138515 | 138635 |
| exon | 138886 | 139231 |
| CDS | 131302 | 131305 |
| CDS | 131441 | 131574 |
| CDS | 131867 | 131998 |
| CDS | 135800 | 135990 |
| CDS | 138515 | 138635 |
| CDS | 138886 | 139077 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | HB-KNOX |
| Transcription_Regulator(from PlantTFDB) | TALE |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03790.12 | KNOX1 | 56 | 96 |
| PF03791.12 | KNOX2 | 112 | 163 |
| PF03789.12 | ELK | 220 | 241 |
| PF05920.10 | Homeobox_KN | 260 | 299 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.