PH01000761G0640's details annotation
1.Annotation
ICBR annotation: cyclin-L1-1, putative, expressed
Blast result AT2G26430 : 4.30E-92
Blast annotation: arginine-rich cyclin 1
2.Location
Scaffold: PH01000761
Strand: +
| Region | Start | End |
| gene | 478418 | 484279 |
| mRNA | 478418 | 484279 |
| exon | 478418 | 478770 |
| exon | 478860 | 479000 |
| exon | 479206 | 479372 |
| exon | 482656 | 482917 |
| exon | 483011 | 483374 |
| exon | 483418 | 483504 |
| exon | 483613 | 484279 |
| CDS | 478702 | 478770 |
| CDS | 478860 | 479000 |
| CDS | 479206 | 479372 |
| CDS | 482656 | 482917 |
| CDS | 483011 | 483374 |
| CDS | 483418 | 483504 |
| CDS | 483613 | 483743 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001278 | protein_kinase_binding ATPase activity, coupled to transmembrane movement of substances, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00134.22 | Cyclin_N | 2 | 92 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000079 | regulation of cyclin-dependent protein serine/threonine kinase activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0006396 | RNA processing |
| GO:0019901 | protein kinase binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.