PH01000763G0250's details annotation
1.Annotation
ICBR annotation: transport protein particle component, Bet3, domain containing protein, expressed
Blast result AT5G58030 : 5.80E-40
Blast annotation: Transport protein particle (TRAPP) component
2.Location
Scaffold: PH01000763
Strand: -
| Region | Start | End |
| gene | 253619 | 257862 |
| mRNA | 253619 | 257862 |
| exon | 253619 | 254401 |
| exon | 254438 | 254545 |
| exon | 254632 | 254692 |
| exon | 254773 | 254849 |
| exon | 256674 | 257862 |
| CDS | 254372 | 254401 |
| CDS | 254438 | 254545 |
| CDS | 254632 | 254692 |
| CDS | 254773 | 254849 |
| CDS | 256674 | 256991 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000370 | small GTPase mediated signal transduction, |
| coexpression network | CFinderM000666 | purine ribonucleoside salvage, adenosine kinase activity, GTP binding, small GTPase mediated signal transduction, acid-amino acid ligase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04051.15 | TRAPP | 107 | 185 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.