PH01000765G0660's details annotation
1.Annotation
ICBR annotation: RNA recognition motif, putative, expressed
Blast result AT5G25060 : 0.00E+00
Blast annotation: RNA recognition motif (RRM)-containing protein
2.Location
Scaffold: PH01000765
Strand: +
| Region | Start | End |
| gene | 419349 | 430472 |
| mRNA | 419349 | 430472 |
| exon | 419349 | 421537 |
| exon | 421614 | 421776 |
| exon | 421930 | 421975 |
| exon | 423189 | 423225 |
| exon | 424114 | 424242 |
| exon | 424533 | 424652 |
| exon | 424745 | 424910 |
| exon | 425049 | 425161 |
| exon | 425314 | 425385 |
| exon | 425993 | 426214 |
| exon | 426705 | 426763 |
| exon | 426858 | 426936 |
| exon | 427035 | 427172 |
| exon | 427919 | 428143 |
| exon | 428236 | 429023 |
| exon | 429137 | 429309 |
| exon | 429526 | 430472 |
| CDS | 421478 | 421537 |
| CDS | 421614 | 421776 |
| CDS | 421930 | 421975 |
| CDS | 423189 | 423225 |
| CDS | 424114 | 424242 |
| CDS | 424533 | 424652 |
| CDS | 424745 | 424910 |
| CDS | 425049 | 425161 |
| CDS | 425314 | 425385 |
| CDS | 425993 | 426214 |
| CDS | 426705 | 426763 |
| CDS | 426858 | 426936 |
| CDS | 427035 | 427172 |
| CDS | 427919 | 428143 |
| CDS | 428236 | 429023 |
| CDS | 429137 | 429309 |
| CDS | 429526 | 429782 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00076.21 | RRM_1 | 177 | 250 |
| PF01805.19 | Surp | 322 | 374 |
| PF08312.11 | cwf21 | 804 | 848 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Spliceosome | U2-associated protein SR140 | ko03041 | K12842 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
| GO:0003723 | RNA binding |
| GO:0006396 | RNA processing |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.