PH01000765G0720's details annotation
1.Annotation
ICBR annotation: CR084 protein, putative, expressed
Blast result AT2G24020 : 1.50E-55
Blast annotation: Uncharacterised BCR, YbaB family COG0718
2.Location
Scaffold: PH01000765
Strand: +
| Region | Start | End |
| gene | 486263 | 491966 |
| mRNA | 486263 | 491966 |
| exon | 486263 | 486533 |
| exon | 489535 | 489674 |
| exon | 490426 | 490526 |
| exon | 490606 | 490645 |
| exon | 491426 | 491497 |
| exon | 491730 | 491786 |
| exon | 491867 | 491966 |
| CDS | 486461 | 486533 |
| CDS | 489535 | 489674 |
| CDS | 490426 | 490526 |
| CDS | 490606 | 490645 |
| CDS | 491426 | 491497 |
| CDS | 491730 | 491786 |
| CDS | 491867 | 491941 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001704 | RLK-Pelle_DLSV (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02575.15 | YbaB_DNA_bd | 86 | 174 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.