PH01000767G0020's details annotation
1.Annotation
ICBR annotation: zinc ion binding protein, putative, expressed
Blast result AT1G17210 : 0.00E+00
Blast annotation: IAP-like protein 1
2.Location
Scaffold: PH01000767
Strand: -
| Region | Start | End |
| gene | 2806 | 11402 |
| mRNA | 2806 | 11402 |
| exon | 2806 | 3116 |
| exon | 4640 | 4684 |
| exon | 4951 | 5201 |
| exon | 5654 | 7400 |
| exon | 7515 | 7855 |
| exon | 8562 | 8685 |
| exon | 8952 | 8987 |
| exon | 9097 | 9343 |
| exon | 10215 | 11402 |
| CDS | 3066 | 3116 |
| CDS | 4640 | 4684 |
| CDS | 4951 | 5201 |
| CDS | 5654 | 7400 |
| CDS | 7515 | 7855 |
| CDS | 8562 | 8685 |
| CDS | 8952 | 8987 |
| CDS | 9097 | 9343 |
| CDS | 10215 | 10270 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07967.12 | zf-C3HC | 78 | 210 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005634 | nucleus |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.