PH01000771G0460's details annotation
1.Annotation
ICBR annotation: nucleoside transporter, putative, expressed
Blast result AT4G05120 : 6.00E-162
Blast annotation: Major facilitator superfamily protein
2.Location
Scaffold: PH01000771
Strand: -
| Region | Start | End |
| gene | 352409 | 358169 |
| mRNA | 352409 | 358169 |
| exon | 352409 | 354041 |
| exon | 354126 | 354408 |
| exon | 354542 | 354702 |
| exon | 354765 | 354970 |
| exon | 355580 | 355685 |
| exon | 355800 | 355943 |
| exon | 356023 | 356178 |
| exon | 356653 | 356757 |
| exon | 356875 | 358169 |
| CDS | 353934 | 354041 |
| CDS | 354126 | 354408 |
| CDS | 354542 | 354702 |
| CDS | 354765 | 354970 |
| CDS | 355580 | 355685 |
| CDS | 355800 | 355943 |
| CDS | 356023 | 356178 |
| CDS | 356653 | 356757 |
| CDS | 356875 | 356916 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01733.17 | Nucleoside_tran | 124 | 430 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005337 | nucleoside transmembrane transporter activity |
| GO:0006810 | transport |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.