PH01000771G0500's details annotation
1.Annotation
ICBR annotation: nucleoside transporter, putative, expressed
Blast result AT4G05120 : 1.10E-58
Blast annotation: Major facilitator superfamily protein
2.Location
Scaffold: PH01000771
Strand: -
| Region | Start | End |
| gene | 382919 | 386180 |
| mRNA | 382919 | 386180 |
| exon | 382919 | 383544 |
| exon | 383636 | 383894 |
| exon | 383979 | 384139 |
| exon | 384715 | 384858 |
| exon | 384944 | 385099 |
| exon | 385203 | 385307 |
| exon | 385396 | 385458 |
| exon | 385605 | 386180 |
| CDS | 383437 | 383544 |
| CDS | 383636 | 383894 |
| CDS | 383979 | 384139 |
| CDS | 384715 | 384858 |
| CDS | 384944 | 385099 |
| CDS | 385203 | 385307 |
| CDS | 385396 | 385458 |
| CDS | 385605 | 385637 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01733.17 | Nucleoside_tran | 184 | 336 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005337 | nucleoside transmembrane transporter activity |
| GO:0006810 | transport |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.