Annotation of co-expression genes

PH01000775G0840's details annotation

1.Annotation

ICBR annotation: phenylalanyl-tRNA synthetase, putative, expressed

Blast result AT1G70570 : 1.40E-33
Blast annotation: anthranilate phosphoribosyltransferase, putative

2.Location

Scaffold: PH01000775
Strand: +

RegionStartEnd
gene527629533064
mRNA527629533064
exon527629528737
exon528924528979
exon529069529161
exon530064530154
exon530244530281
exon530365530403
exon530698530774
exon530850530937
exon531067531101
exon532622532707
exon532792533064
CDS528711528737
CDS528924528979
CDS529069529161
CDS530064530154
CDS530244530281
CDS530365530403
CDS530698530774
CDS530850530937
CDS531067531101
CDS532622532707
CDS532792533013

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01409.19tRNA-synt_2d70163

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Aminoacyl-tRNA biosynthesisphenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]ko00970K01889

10.Gene Ontology

GO AccessionGO Annotation
GO:0000049tRNA binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0005524ATP binding
GO:0005737cytoplasm
GO:0008152metabolic process
GO:0016757transferase activity, transferring glycosyl groups
GO:0043039tRNA aminoacylation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.