Annotation of co-expression genes

PH01000778G0130's details annotation

1.Annotation

ICBR annotation: drought induced 19 protein, putative, expressed

Blast result AT3G05700 : 7.30E-24
Blast annotation: Drought-responsive family protein

2.Location

Scaffold: PH01000778
Strand: +

RegionStartEnd
gene7615179748
mRNA7615179748
exon7615176622
exon7672076925
exon7827978356
exon7848478764
exon7936279748
CDS7654776622
CDS7672076925
CDS7827978356
CDS7848478764
CDS7936279470

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001219Jumonji Transcription_Regulator(from iTAK)
NAC Transcription_Regulator(from PlantTFDB)
coexpression networkCFinderM001392nuclear origin of replication recognition complex,
Terpenoid_backbone_biosynthesis
NAC Transcription_Regulator(from PlantTFDB)
isoprenoid biosynthetic process,
DNA_replication
protein dephosphorylation,
coexpression networkCFinderM001393nuclear origin of replication recognition complex,
response to desiccation,
Terpenoid_backbone_biosynthesis
isoprenoid biosynthetic process,
protein dephosphorylation,
DNA_replication

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF05605.11zf-Di1964116
PF14571.5Di19_C136246

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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