Annotation of co-expression genes

PH01000778G0710's details annotation

1.Annotation

ICBR annotation: PPR repeat domain containing protein, putative, expressed

Blast result AT1G30610 : 0.00E+00
Blast annotation: pentatricopeptide (PPR) repeat-containing protein

2.Location

Scaffold: PH01000778
Strand: +

RegionStartEnd
gene478344486323
mRNA478344486323
exon478344479962
exon481011481202
exon481482481580
exon481867481948
exon482033482224
exon482338482451
exon482748482838
exon482905483062
exon484211484636
exon485214486323
CDS478617479962
CDS481011481202
CDS481482481580
CDS481867481948
CDS482033482224
CDS482338482451
CDS482748482838
CDS482905483062
CDS484211484636
CDS485214485597

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01535.19PPR548573
PF13041.5PPR_2630674
PF01535.19PPR704732
PF13812.5PPR_3770815
PF01535.19PPR851880

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.