Annotation of co-expression genes

PH01000780G0200's details annotation

1.Annotation

ICBR annotation: 60S ribosomal protein L23A, putative, expressed

Blast result AT3G55280 : 2.00E-46
Blast annotation: ribosomal protein L23AB

2.Location

Scaffold: PH01000780
Strand: +

RegionStartEnd
gene147348150529
mRNA147348150529
exon147348148136
exon148611148971
exon149056150529
CDS148124148136
CDS148611148971
CDS149056149140

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001568FAR1 Transcription_Regulator(from PlantTFDB)
RLK-Pelle_LRR-XV (from iTAK)
coexpression networkCFinderM001632translation,
Ribosome
structural constituent of ribosome,
intracellular,
Ribosome
HSF Transcription_Regulator(from PlantTFDB)
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
large ribosomal subunit,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03939.12Ribosomal_L23eN1462
PF00276.19Ribosomal_L2372133

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Ribosomelarge subunit ribosomal protein L23Aeko03011K02893

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003735structural constituent of ribosome
GO:0005622intracellular
GO:0005840ribosome
GO:0006412translation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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