PH01000781G0220's details annotation
1.Annotation
ICBR annotation: abscisic stress-ripening, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000781
Strand: -
| Region | Start | End |
| gene | 122135 | 123279 |
| mRNA | 122135 | 123279 |
| exon | 122135 | 122603 |
| exon | 122906 | 123279 |
| CDS | 122430 | 122603 |
| CDS | 122906 | 123208 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000064 | D-amino acid catabolic process, GT77 GlycosylTransferases endoplasmic reticulum, response to stress, NAC Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02496.15 | ABA_WDS | 74 | 151 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006950 | response to stress |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.