Annotation of co-expression genes

PH01000783G0290's details annotation

1.Annotation

ICBR annotation: hydrolase, putative, expressed

Blast result AT1G51760 : 2.00E-78
Blast annotation: peptidase M20/M25/M40 family protein

2.Location

Scaffold: PH01000783
Strand: +

RegionStartEnd
gene219409221872
mRNA219409221872
exon219409220646
exon220739221872
CDS220200220646
CDS220739221260

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings

Created with Highcharts 4.1.6Expression value (FPKM)gene expression profiling among different tissue samplesleaf_SRR2035212leaf_SRR2035327leaf_SRR4450543_CKleaf_SRR4450545_Dehydrationleaf_SRR4450547_Dehydrationleaf_SRR4450549_Coldleaf_SRR4450551_ColdLeaf-2Leaf_ERR105068Root_1Root_3Root_5Root_ERR105075RhizomeRhizome_ERR105074culm_SRR1187864shoot_SAM_Ashoot_MIN_Cshoot_YNO_Ashoot_YNO_Cshoot_MNO_Ashoot_MNO_Cshoot_SAM_Cshoot_YIN_Ashoot_YIN_Cshoot_MIN_Ashoot_SRR3050072shoot_SRR3056056shoot_SRR3521411Shoot_A2Shoot_B1Shoot_B3Shoot_C2Shoot_D1Shoot_D3Bud_1Bud_3panicle_early_ERR105069panicle_flowering_ERR10507102.557.51012.51517.52022.52527.53032.535Highcharts.com

7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01546.27Peptidase_M2044305
PF07687.13M20_dimer104194

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0008152metabolic process
GO:0016787hydrolase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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