PH01000784G0200's details annotation
1.Annotation
ICBR annotation: hydroxymethylglutaryl-CoA lyase, putative, expressed
Blast result AT2G26800 : 1.30E-45
Blast annotation: Aldolase superfamily protein
2.Location
Scaffold: PH01000784
Strand: +
| Region | Start | End |
| gene | 137086 | 140594 |
| mRNA | 137086 | 140594 |
| exon | 137086 | 138114 |
| exon | 138521 | 138583 |
| exon | 139964 | 140079 |
| exon | 140175 | 140594 |
| CDS | 137943 | 138114 |
| CDS | 138521 | 138583 |
| CDS | 139964 | 140079 |
| CDS | 140175 | 140408 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000839 | TUB Transcription_Regulator(from iTAK) hydroxymethylglutaryl-CoA lyase activity, Spliceosome |
| coexpression network | CFinderM001207 | regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity regulation of transcription, DNA-dependent, WRKY Transcription_Regulator(from PlantTFDB) hydroxymethylglutaryl-CoA lyase activity, Spliceosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00682.18 | HMGL-like | 83 | 172 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004419 | hydroxymethylglutaryl-CoA lyase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.