Annotation of co-expression genes

PH01000784G0480's details annotation

1.Annotation

ICBR annotation: ribosomal protein L24, putative, expressed

Blast result AT5G23535 : 5.30E-61
Blast annotation: KOW domain-containing protein

2.Location

Scaffold: PH01000784
Strand: -

RegionStartEnd
gene303138306135
mRNA303138306135
exon303138303234
exon303713303849
exon303952304055
exon305272305367
exon305462306135
CDS303143303234
CDS303713303849
CDS303952304055
CDS305272305367
CDS305462305521

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001649CMGC_CDK-PITSLRE (from iTAK)
LUG Transcription_Regulator(from iTAK)
sphingolipid metabolic process,
glucosylceramidase activity,
coexpression networkCFinderM001828ARID Transcription_Regulator(from iTAK)
ion transport,
intracellular,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00467.28KOW1748
PF17136.3ribosomal_L2451115

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Ribosomelarge subunit ribosomal protein L24ko03011K02895

10.Gene Ontology

GO AccessionGO Annotation
GO:0003735structural constituent of ribosome
GO:0005622intracellular
GO:0005840ribosome
GO:0006412translation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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