PH01000792G0670's details annotation
1.Annotation
ICBR annotation: CPuORF15 - conserved peptide uORF-containing transcript, expressed
Blast result AT3G12010 : 1.10E-62
Blast annotation: -
2.Location
Scaffold: PH01000792
Strand: +
| Region | Start | End |
| gene | 500585 | 502673 |
| mRNA | 500585 | 502673 |
| exon | 500585 | 500781 |
| exon | 500865 | 500966 |
| exon | 501463 | 501603 |
| exon | 501687 | 501946 |
| exon | 502129 | 502282 |
| exon | 502464 | 502673 |
| CDS | 500740 | 500781 |
| CDS | 500865 | 500966 |
| CDS | 501463 | 501603 |
| CDS | 501687 | 501946 |
| CDS | 502129 | 502282 |
| CDS | 502464 | 502520 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.