PH01000794G0030's details annotation
1.Annotation
ICBR annotation: pirin, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000794
Strand: +
| Region | Start | End |
| gene | 12845 | 16229 |
| mRNA | 12845 | 16229 |
| exon | 12845 | 13609 |
| exon | 14463 | 14531 |
| exon | 14941 | 15273 |
| exon | 15424 | 15520 |
| exon | 15571 | 16229 |
| CDS | 13467 | 13609 |
| CDS | 14463 | 14531 |
| CDS | 14941 | 15273 |
| CDS | 15424 | 15520 |
| CDS | 15571 | 15828 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000249 | RLK-Pelle_RLCK-VIIb (from iTAK) apoplast, lignin catabolic process, hydrolase activity, hydroquinone:oxygen_oxidoreductase_activity |
| coexpression network | CFinderM000827 | RLK-Pelle_RLCK-VIIb (from iTAK) RLK-Pelle_LRR-III (from iTAK) microtubule, protein complex, Selenocompound_metabolism apoplast, methionine biosynthetic process, cellular amino acid biosynthetic process, microtubule-based process, protein polymerization, lignin catabolic process, 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, Phagosome Cysteine_and_methionine_metabolism |
| coexpression network | CFinderM000828 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis microtubule, protein complex, RLK-Pelle_LRR-III (from iTAK) 3-deoxy-7-phosphoheptulonate synthase activity, microtubule-based process, protein polymerization, aromatic amino acid family biosynthetic process, Phagosome structural constituent of cytoskeleton, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00855.16 | PWWP | 14 | 34 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.