PH01000797G0560's details annotation
1.Annotation
ICBR annotation: transmembrane anterior posterior transformation 1, putative, expressed
Blast result AT1G67960 : 1.40E-42
Blast annotation: -
2.Location
Scaffold: PH01000797
Strand: -
| Region | Start | End |
| gene | 347249 | 357233 |
| mRNA | 347249 | 357233 |
| exon | 347249 | 348984 |
| exon | 349074 | 349142 |
| exon | 349692 | 349814 |
| exon | 351329 | 351402 |
| exon | 351490 | 351578 |
| exon | 352706 | 352809 |
| exon | 355647 | 355906 |
| exon | 356586 | 357233 |
| CDS | 348784 | 348984 |
| CDS | 349074 | 349142 |
| CDS | 349692 | 349814 |
| CDS | 351329 | 351402 |
| CDS | 351490 | 351578 |
| CDS | 352706 | 352809 |
| CDS | 355647 | 355906 |
| CDS | 356586 | 357132 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05346.10 | DUF747 | 311 | 358 |
| PF05346.10 | DUF747 | 360 | 476 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.