PH01000802G0390's details annotation
1.Annotation
ICBR annotation: CIP111, putative, expressed
Blast result AT3G56690 : 0.00E+00
Blast annotation: Cam interacting protein 111
2.Location
Scaffold: PH01000802
Strand: -
| Region | Start | End |
| gene | 249900 | 259986 |
| mRNA | 249900 | 259986 |
| exon | 249900 | 250844 |
| exon | 250954 | 251043 |
| exon | 251630 | 252056 |
| exon | 254827 | 255200 |
| exon | 255637 | 255838 |
| exon | 257033 | 257240 |
| exon | 257334 | 258145 |
| exon | 258230 | 258391 |
| exon | 259534 | 259986 |
| CDS | 250411 | 250844 |
| CDS | 250954 | 251043 |
| CDS | 251630 | 252056 |
| CDS | 254827 | 255200 |
| CDS | 255637 | 255838 |
| CDS | 257033 | 257240 |
| CDS | 257334 | 258145 |
| CDS | 258230 | 258391 |
| CDS | 259534 | 259821 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00004.28 | AAA | 431 | 558 |
| PF00004.28 | AAA | 730 | 863 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0005524 | ATP binding |
| GO:0017111 | nucleoside-triphosphatase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.