PH01000803G0280's details annotation
1.Annotation
ICBR annotation: modifier of rudimentary protein, expressed
Blast result AT3G53120 : 1.70E-64
Blast annotation: Modifier of rudimentary (Mod(r)) protein
2.Location
Scaffold: PH01000803
Strand: -
| Region | Start | End |
| gene | 179145 | 189172 |
| mRNA | 179145 | 189172 |
| exon | 179145 | 180245 |
| exon | 180603 | 180723 |
| exon | 180935 | 180981 |
| exon | 183678 | 183735 |
| exon | 184113 | 184153 |
| exon | 184911 | 184968 |
| exon | 185698 | 185785 |
| exon | 186873 | 187091 |
| exon | 187565 | 187604 |
| exon | 188284 | 189172 |
| CDS | 180085 | 180245 |
| CDS | 180603 | 180723 |
| CDS | 180935 | 180981 |
| CDS | 183678 | 183735 |
| CDS | 184113 | 184153 |
| CDS | 184911 | 184968 |
| CDS | 185698 | 185785 |
| CDS | 186873 | 187091 |
| CDS | 187565 | 187604 |
| CDS | 188284 | 188647 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07200.12 | Mod_r | 78 | 220 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Endocytosis | ESCRT-I complex subunit VPS37 | ko04144 | K12185 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.