PH01000803G0300's details annotation
1.Annotation
ICBR annotation: PPR repeat domain containing protein, putative, expressed
Blast result AT1G10910 : 0.00E+00
Blast annotation: Pentatricopeptide repeat (PPR) superfamily protein
2.Location
Scaffold: PH01000803
Strand: +
| Region | Start | End |
| gene | 199297 | 205118 |
| mRNA | 199297 | 205118 |
| exon | 199297 | 199901 |
| exon | 200146 | 200230 |
| exon | 200328 | 200591 |
| exon | 200697 | 200999 |
| exon | 201718 | 201822 |
| exon | 201929 | 202028 |
| exon | 202554 | 202873 |
| exon | 203119 | 203295 |
| exon | 203376 | 203504 |
| exon | 204200 | 205118 |
| CDS | 199672 | 199901 |
| CDS | 200146 | 200230 |
| CDS | 200328 | 200591 |
| CDS | 200697 | 200999 |
| CDS | 201718 | 201822 |
| CDS | 201929 | 202028 |
| CDS | 202554 | 202873 |
| CDS | 203119 | 203295 |
| CDS | 203376 | 203504 |
| CDS | 204200 | 204433 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13041.5 | PPR_2 | 153 | 200 |
| PF17177.3 | PPR_long | 205 | 318 |
| PF13041.5 | PPR_2 | 328 | 375 |
| PF13041.5 | PPR_2 | 398 | 446 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.