PH01000803G0680's details annotation
1.Annotation
ICBR annotation: 3-5 exonuclease/ nucleic acid binding protein, putative, expressed
Blast result AT2G25910 : 7.00E-135
Blast annotation: 3-5 exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein
2.Location
Scaffold: PH01000803
Strand: -
| Region | Start | End |
| gene | 485668 | 492261 |
| mRNA | 485668 | 492261 |
| exon | 485668 | 485866 |
| exon | 486665 | 486707 |
| exon | 486805 | 486934 |
| exon | 487278 | 487494 |
| exon | 487683 | 487729 |
| exon | 488987 | 489083 |
| exon | 489372 | 489422 |
| exon | 489522 | 489653 |
| exon | 490776 | 490936 |
| exon | 491854 | 492261 |
| CDS | 485792 | 485866 |
| CDS | 486665 | 486707 |
| CDS | 486805 | 486934 |
| CDS | 487278 | 487494 |
| CDS | 487683 | 487729 |
| CDS | 488987 | 489083 |
| CDS | 489372 | 489422 |
| CDS | 489522 | 489653 |
| CDS | 490776 | 490936 |
| CDS | 491854 | 491899 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001394 | membrane, RLK-Pelle_LRR-Xa (from iTAK) SBP Transcription_Regulator(from PlantTFDB) ATPase activity, nucleoside-triphosphatase activity, 3'-5' exonuclease activity, nucleobase-containing compound metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01612.19 | DNA_pol_A_exo1 | 43 | 214 |
| PF00013.28 | KH_1 | 268 | 326 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0003723 | RNA binding |
| GO:0006139 | nucleobase-containing compound metabolic process |
| GO:0008408 | 3'-5' exonuclease activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.