PH01000804G0030's details annotation
1.Annotation
ICBR annotation: dolichyl-phosphate beta-glycosyltransferase, putative, expressed
Blast result AT1G20575 : 2.00E-118
Blast annotation: Nucleotide-diphospho-sugar transferases superfamily protein
2.Location
Scaffold: PH01000804
Strand: +
| Region | Start | End |
| gene | 12603 | 18240 |
| mRNA | 12603 | 18240 |
| exon | 12603 | 14188 |
| exon | 15235 | 15334 |
| exon | 15749 | 15774 |
| exon | 16179 | 16343 |
| exon | 16416 | 16530 |
| exon | 16620 | 18240 |
| CDS | 14061 | 14188 |
| CDS | 15235 | 15334 |
| CDS | 15749 | 15774 |
| CDS | 16179 | 16343 |
| CDS | 16416 | 16530 |
| CDS | 16620 | 16724 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000229 | GT2 GlycosylTransferases NuA4_histone_acetyltransferase_complex histone_H2A_acetylation protein homooligomerization, histone_H4_acetylation chromatin remodeling, negative_regulation_of_transcription,_DNA-templated RNA modification, pseudouridine synthesis, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GT2 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00535.25 | Glycos_transf_2 | 19 | 187 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| N-Glycan biosynthesis | dolichol-phosphate mannosyltransferase [EC:2.4.1.83] | ko00510 | K00721 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.