Annotation of co-expression genes

PH01000804G0520's details annotation

1.Annotation

ICBR annotation: domain of unknown function domain containing protein, expressed

Blast result AT5G26740 : 2.00E-129
Blast annotation: Protein of unknown function (DUF300)

2.Location

Scaffold: PH01000804
Strand: -

RegionStartEnd
gene338102343879
mRNA338102343879
exon338102338795
exon338884339117
exon339795339867
exon340894340967
exon341998343879
CDS338478338795
CDS338884339117
CDS339795339867
CDS340894340967
CDS341998342150

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000850RLK-Pelle_DLSV (from iTAK)
coexpression networkCFinderM001237
coexpression networkCFinderM001327
coexpression networkCFinderM001328GT32 GlycosylTransferases
Golgi stack,
CMGC_SRPK (from iTAK)
coexpression networkCFinderM001630GTnc GlycosylTransferases
HSF Transcription_Regulator(from PlantTFDB)
coexpression networkCFinderM001704RLK-Pelle_DLSV (from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03619.15Solute_trans_a10268

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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