Annotation of co-expression genes

PH01000806G0400's details annotation

1.Annotation

ICBR annotation: phytosulfokine receptor precursor, putative, expressed

Blast result AT1G72300 : 0
Blast annotation: Leucine-rich receptor-like protein kinase family protein

2.Location

Scaffold: PH01000806
Strand: +

RegionStartEnd
gene249529253607
mRNA249529253607
exon249529249606
exon250771251766
exon251851251953
exon252075253607
CDS249570249606
CDS250771251766
CDS251851251953
CDS252075253098

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13855.5LRR_82384
PF13855.5LRR_8172223
PF00560.32LRR_1302322
PF00069.24Pkinase434700

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005515protein binding
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.