PH01000809G0200's details annotation
1.Annotation
ICBR annotation: prefoldin, putative, expressed
Blast result AT1G12150 : 9.10E-58
Blast annotation: Plant protein of unknown function (DUF827)
2.Location
Scaffold: PH01000809
Strand: -
| Region | Start | End |
| gene | 149279 | 153780 |
| mRNA | 149279 | 153780 |
| exon | 149279 | 150188 |
| exon | 150314 | 150968 |
| exon | 152446 | 152465 |
| exon | 153329 | 153780 |
| CDS | 149326 | 150188 |
| CDS | 150314 | 150968 |
| CDS | 152446 | 152465 |
| CDS | 153329 | 153662 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000820 | poly(ADP-ribose) glycohydrolase activity, galactonolactone_dehydrogenase_activity |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05701.10 | WEMBL | 124 | 329 |
| PF05701.10 | WEMBL | 337 | 589 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.