PH01000810G0590's details annotation
1.Annotation
ICBR annotation: actin-6, putative, expressed
Blast result AT5G56180 : 1.00E-157
Blast annotation: actin-related protein 8
2.Location
Scaffold: PH01000810
Strand: +
| Region | Start | End |
| gene | 342340 | 347633 |
| mRNA | 342340 | 347633 |
| exon | 342340 | 342968 |
| exon | 343054 | 343139 |
| exon | 343495 | 343565 |
| exon | 343721 | 343788 |
| exon | 344605 | 344666 |
| exon | 344895 | 344992 |
| exon | 345412 | 345493 |
| exon | 346063 | 346205 |
| exon | 346437 | 346585 |
| exon | 346722 | 346801 |
| exon | 346945 | 347063 |
| exon | 347154 | 347633 |
| CDS | 342628 | 342968 |
| CDS | 343054 | 343139 |
| CDS | 343495 | 343565 |
| CDS | 343721 | 343788 |
| CDS | 344605 | 344666 |
| CDS | 344895 | 344992 |
| CDS | 345412 | 345493 |
| CDS | 346063 | 346205 |
| CDS | 346437 | 346585 |
| CDS | 346722 | 346801 |
| CDS | 346945 | 347063 |
| CDS | 347154 | 347246 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12937.6 | F-box-like | 47 | 84 |
| PF00022.18 | Actin | 185 | 368 |
| PF00022.18 | Actin | 376 | 445 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.