PH01000811G0110's details annotation
1.Annotation
ICBR annotation: MAG2, putative, expressed
Blast result AT1G08400 : 2.00E-144
Blast annotation: RINT-1 / TIP-1 family
2.Location
Scaffold: PH01000811
Strand: +
| Region | Start | End |
| gene | 78952 | 83859 |
| mRNA | 78952 | 83859 |
| exon | 78952 | 79584 |
| exon | 79697 | 79804 |
| exon | 80989 | 81101 |
| exon | 81149 | 81190 |
| exon | 81235 | 83859 |
| CDS | 79356 | 79584 |
| CDS | 79697 | 79804 |
| CDS | 80989 | 81101 |
| CDS | 81149 | 81190 |
| CDS | 81235 | 83193 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000207 | anion transport, GT8 GlycosylTransferases RLK-Pelle_LRR-XI-1 (from iTAK) inorganic anion exchanger activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04437.12 | RINT1_TIP1 | 312 | 810 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.