Annotation of co-expression genes

PH01000811G0380's details annotation

1.Annotation

ICBR annotation: transcription factor, putative, expressed

Blast result AT5G06950 : 8.00E-107
Blast annotation: bZIP transcription factor family protein

2.Location

Scaffold: PH01000811
Strand: +

RegionStartEnd
gene248210252643
mRNA248210252643
exon248210248339
exon249046249105
exon250156250239
exon250330250389
exon251155251232
exon251330251381
exon251540251811
exon251910252643
CDS248274248339
CDS249046249105
CDS250156250239
CDS250330250389
CDS251155251232
CDS251330251381
CDS251540251811
CDS251910252182

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000580bZIP Transcription_Regulator(from PlantTFDB)
sequence-specific DNA binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)bZIP
Transcription_Regulator(from PlantTFDB)bZIP

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00170.20bZIP_17098
PF14144.5DOG1152227

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Plant hormone signal transductiontranscription factor TGAko04075K14431

10.Gene Ontology

GO AccessionGO Annotation
GO:0003700sequence-specific DNA binding transcription factor activity
GO:0006355regulation of transcription, DNA-dependent
GO:0043565sequence-specific DNA binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.