Annotation of co-expression genes

PH01000812G0550's details annotation

1.Annotation

ICBR annotation: MYB family transcription factor, putative, expressed

Blast result AT4G32730 : 1.00E-129
Blast annotation: Homeodomain-like protein

2.Location

Scaffold: PH01000812
Strand: -

RegionStartEnd
gene389879399376
mRNA389879399376
exon389879390094
exon390390390476
exon390823391035
exon391316391400
exon392061392260
exon392548394336
exon394969395097
exon396072396175
exon396283396334
exon396418396511
exon396977397034
exon397674397728
exon397815399376
CDS390002390094
CDS390390390476
CDS390823391035
CDS391316391400
CDS392061392260
CDS392548394336
CDS394969395097
CDS396072396175
CDS396283396334
CDS396418396511
CDS396977397034
CDS397674397728
CDS397815397930

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)MYB
Transcription_Regulator(from PlantTFDB)MYB

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00249.30Myb_DNA-binding5076
PF13921.5Myb_DNA-bind_6122182

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0003682chromatin binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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