Annotation of co-expression genes

PH01000816G0230's details annotation

1.Annotation

ICBR annotation: MLO domain containing protein, putative, expressed

Blast result AT5G65970 : 1.90E-64
Blast annotation: Seven transmembrane MLO family protein

2.Location

Scaffold: PH01000816
Strand: -

RegionStartEnd
gene150824161924
mRNA150824161924
exon150824151615
exon151681151776
exon152589152762
exon152840152880
exon153148153197
exon153583153655
exon153747153821
exon154241154329
exon154706154827
exon155046155239
exon155365155422
exon156541156606
exon157293157349
exon157615157675
exon157801157861
exon159333159428
exon159518159596
exon160120160182
exon160902161924
CDS151088151615
CDS151681151776
CDS152589152762
CDS152840152880
CDS153148153197
CDS153583153655
CDS153747153821
CDS154241154329
CDS154706154827
CDS155046155239
CDS155365155422
CDS156541156606
CDS157293157349
CDS157615157675
CDS157801157861
CDS159333159428
CDS159518159596
CDS160120160182
CDS160902160997

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000154GT37 GlycosylTransferases
cell wall biogenesis,
cell death,
protein catabolic process,
Various_types_of_N-glycan_biosynthesis
N-Glycan_biosynthesis
galactoside 2-alpha-L-fucosyltransferase activity,
integral to membrane,
membrane,
mRNA_surveillance_pathway
coexpression networkCFinderM000650proteasome complex,
Golgi_transport_complex
regulation of protein catabolic process,
cell death,
binding,
enzyme regulator activity,
RNA metabolic process,
coexpression networkCFinderM001237
coexpression networkCFinderM001738GT37 GlycosylTransferases
galactoside 2-alpha-L-fucosyltransferase activity,
cell wall biogenesis,
cell death,
Various_types_of_N-glycan_biosynthesis
N-Glycan_biosynthesis
membrane coat,
mRNA_surveillance_pathway

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03094.14Mlo190321
PF03094.14Mlo372485
PF03094.14Mlo498518
PF03094.14Mlo541606

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0008219cell death
GO:0016021integral to membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.