PH01000818G0140's details annotation
1.Annotation
ICBR annotation: peptidase, T1 family, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000818
Strand: -
| Region | Start | End |
| gene | 172958 | 182653 |
| mRNA | 172958 | 182653 |
| exon | 172958 | 173013 |
| exon | 173115 | 173258 |
| exon | 174179 | 174256 |
| exon | 174465 | 174571 |
| exon | 174687 | 174758 |
| exon | 174837 | 174946 |
| exon | 176794 | 176838 |
| exon | 177767 | 178027 |
| exon | 178371 | 178492 |
| exon | 179106 | 179426 |
| exon | 181352 | 181549 |
| exon | 181824 | 182653 |
| CDS | 173008 | 173013 |
| CDS | 173115 | 173258 |
| CDS | 174179 | 174256 |
| CDS | 174465 | 174571 |
| CDS | 174687 | 174758 |
| CDS | 174837 | 174946 |
| CDS | 176794 | 176838 |
| CDS | 177767 | 178027 |
| CDS | 178371 | 178492 |
| CDS | 179106 | 179426 |
| CDS | 181352 | 181549 |
| CDS | 181824 | 182000 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000136 | CPP Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.