PH01000820G0110's details annotation
1.Annotation
ICBR annotation: aldehyde dehydrogenase, putative, expressed
Blast result AT1G23800 : 0.00E+00
Blast annotation: aldehyde dehydrogenase 2B7
2.Location
Scaffold: PH01000820
Strand: -
| Region | Start | End |
| gene | 85225 | 91231 |
| mRNA | 85225 | 91231 |
| exon | 85225 | 86028 |
| exon | 86135 | 86196 |
| exon | 86281 | 86418 |
| exon | 86711 | 86848 |
| exon | 86943 | 87116 |
| exon | 87249 | 87338 |
| exon | 88534 | 88763 |
| exon | 88866 | 89019 |
| exon | 89107 | 89249 |
| exon | 89442 | 89579 |
| exon | 90344 | 90411 |
| exon | 90504 | 90531 |
| exon | 90937 | 91231 |
| CDS | 85755 | 86028 |
| CDS | 86135 | 86196 |
| CDS | 86281 | 86418 |
| CDS | 86711 | 86848 |
| CDS | 86943 | 87116 |
| CDS | 87249 | 87338 |
| CDS | 88534 | 88763 |
| CDS | 88866 | 89019 |
| CDS | 89107 | 89249 |
| CDS | 89442 | 89579 |
| CDS | 90344 | 90411 |
| CDS | 90504 | 90531 |
| CDS | 90937 | 91045 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00171.21 | Aldedh | 77 | 539 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Lysine degradation | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00310 | K00128 |
| Arginine and proline metabolism | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00330 | K00128 |
| Histidine metabolism | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00340 | K00128 |
| Tryptophan metabolism | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00380 | K00128 |
| beta-Alanine metabolism | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00410 | K00128 |
| Limonene and pinene degradation | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00903 | K00128 |
| Chloroalkane and chloroalkene degradation | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00625 | K00128 |
| Glycolysis / Gluconeogenesis | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00010 | K00128 |
| Pentose and glucuronate interconversions | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00040 | K00128 |
| Ascorbate and aldarate metabolism | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00053 | K00128 |
| Pyruvate metabolism | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00620 | K00128 |
| Propanoate metabolism | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00640 | K00128 |
| Fatty acid metabolism | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko01212 | K00128 |
| Glycerolipid metabolism | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00561 | K00128 |
| 302 Valine, leucine and isoleucine degradation | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | K00128 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016491 | oxidoreductase activity |
| GO:0016620 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.