PH01000822G0470's details annotation
1.Annotation
ICBR annotation: MRH1, putative, expressed
Blast result AT4G18640 : 2.00E-114
Blast annotation: Leucine-rich repeat protein kinase family protein
2.Location
Scaffold: PH01000822
Strand: -
| Region | Start | End |
| gene | 321292 | 323969 |
| mRNA | 321292 | 323969 |
| exon | 321292 | 321747 |
| exon | 321850 | 322041 |
| exon | 322246 | 322400 |
| exon | 322501 | 322633 |
| exon | 322730 | 322920 |
| exon | 323315 | 323969 |
| CDS | 321484 | 321747 |
| CDS | 321850 | 322041 |
| CDS | 322246 | 322400 |
| CDS | 322501 | 322633 |
| CDS | 322730 | 322920 |
| CDS | 323315 | 323768 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001104 | RLK-Pelle_LRR-VI-2 (from iTAK) GARP-G2-like Transcription_Regulator(from iTAK) G2-like Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07714.16 | Pkinase_Tyr | 179 | 429 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.