Annotation of co-expression genes

PH01000823G0020's details annotation

1.Annotation

ICBR annotation: armadillo/beta-catenin repeat family protein, putative, expressed

Blast result AT2G23140 : 0.00E+00
Blast annotation: RING/U-box superfamily protein with ARM repeat domain

2.Location

Scaffold: PH01000823
Strand: +

RegionStartEnd
gene2162427420
mRNA2162427420
exon2162422468
exon2354423657
exon2378825833
exon2592527420
CDS2217822468
CDS2354423657
CDS2378825833
CDS2592525984

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000873GH47 Glycoside_Hydrolases
AGC_NDR (from iTAK)
thiol oxidase activity,
N-Glycan_biosynthesis
Various_types_of_N-glycan_biosynthesis
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity,
coexpression networkCFinderM001859protein catabolic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF04564.14U-box236307
PF00514.22Arm584621
PF00514.22Arm623662
PF00514.22Arm666703

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000151ubiquitin ligase complex
GO:0004842ubiquitin-protein ligase activity
GO:0005488binding
GO:0005515protein binding
GO:0016567protein ubiquitination

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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