PH01000823G0400's details annotation
1.Annotation
ICBR annotation: homeobox protein knotted-1-like 6, putative, expressed
Blast result AT1G23380 : 1.10E-67
Blast annotation: KNOTTED1-like homeobox gene 6
2.Location
Scaffold: PH01000823
Strand: +
| Region | Start | End |
| gene | 242537 | 246073 |
| mRNA | 242537 | 246073 |
| exon | 242537 | 243678 |
| exon | 243814 | 243924 |
| exon | 244013 | 244151 |
| exon | 244296 | 244363 |
| exon | 244913 | 244982 |
| exon | 245831 | 246073 |
| CDS | 243610 | 243678 |
| CDS | 243814 | 243924 |
| CDS | 244013 | 244151 |
| CDS | 244296 | 244363 |
| CDS | 244913 | 244982 |
| CDS | 245831 | 245883 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | HB-KNOX |
| Transcription_Regulator(from PlantTFDB) | TALE |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03790.12 | KNOX1 | 44 | 83 |
| PF03791.12 | KNOX2 | 93 | 139 |
| PF03789.12 | ELK | 182 | 203 |
| PF05920.10 | Homeobox_KN | 222 | 261 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.