Annotation of co-expression genes

PH01000825G0250's details annotation

1.Annotation

ICBR annotation: helicase conserved C-terminal domain containing protein, expressed

Blast result AT1G10930 : 0.00E+00
Blast annotation: DNA helicase (RECQl4A)

2.Location

Scaffold: PH01000825
Strand: -

RegionStartEnd
gene166028175949
mRNA166028175949
exon166028166189
exon166238166313
exon166579166871
exon166977167054
exon167128167222
exon167312167411
exon168217168272
exon168401168565
exon168772168852
exon168937169095
exon169182169271
exon169359169427
exon169512169582
exon169661169784
exon169948169963
exon170897171048
exon171125171245
exon171571171698
exon171780171965
exon172229172360
exon172446172544
exon174214174630
exon175069175126
exon175664175949
CDS166090166189
CDS166238166313
CDS166579166871
CDS166977167054
CDS167128167222
CDS167312167411
CDS168217168272
CDS168401168565
CDS168772168852
CDS168937169095
CDS169182169271
CDS169359169427
CDS169512169582
CDS169661169784
CDS169948169963
CDS170897171048
CDS171125171245
CDS171571171698
CDS171780171965
CDS172229172360
CDS172446172544
CDS174214174630
CDS175069175126
CDS175664175764

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00270.28DEAD239440
PF00271.30Helicase_C452543
PF16124.4RecQ_Zn_bind555624
PF09382.9RQC631747
PF00570.22HRDC781847

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Homologous recombinationbloom syndrome protein [EC:3.6.4.12]ko03440K10901

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0003824catalytic activity
GO:0004386helicase activity
GO:0005524ATP binding
GO:0005622intracellular
GO:0006260DNA replication
GO:0006281DNA repair
GO:0008026ATP-dependent helicase activity
GO:0043140ATP-dependent 3'-5' DNA helicase activity
GO:0044237cellular metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.