Annotation of co-expression genes

PH01000826G0130's details annotation

1.Annotation

ICBR annotation: syntaxin, putative, expressed

Blast result AT5G08080 : 4.70E-98
Blast annotation: syntaxin of plants 132

2.Location

Scaffold: PH01000826
Strand: +

RegionStartEnd
gene5832763097
mRNA5832763097
exon5832759252
exon6038560489
exon6060460660
exon6082460872
exon6098261070
exon6141761490
exon6157661618
exon6212362209
exon6234462421
exon6254262622
exon6273362798
exon6291563097
CDS5923559252
CDS6038560489
CDS6060460660
CDS6082460872
CDS6098261070
CDS6141761490
CDS6157661618
CDS6212362209
CDS6234462421
CDS6254262622
CDS6273362798
CDS6291563082

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001180SNARE_interactions_in_vesicular_transport
cysteamine dioxygenase activity,
SNAP receptor activity,
coexpression networkCFinderM001181SNARE_interactions_in_vesicular_transport
CAMK_CDPK (from iTAK)
cysteamine dioxygenase activity,
SNAP receptor activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00804.24Syntaxin35240
PF05739.18SNARE242293

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
SNARE interactions in vesicular transportsyntaxin 1B/2/3ko04130K08486

10.Gene Ontology

GO AccessionGO Annotation
GO:0005484SNAP receptor activity
GO:0005515protein binding
GO:0006886intracellular protein transport
GO:0016020membrane
GO:0016192vesicle-mediated transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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