Annotation of co-expression genes

PH01000826G0470's details annotation

1.Annotation

ICBR annotation: phosphatidylinositol-4-phosphate 5-kinase, putative, expressed

Blast result AT3G09920 : 0.00E+00
Blast annotation: phosphatidyl inositol monophosphate 5 kinase

2.Location

Scaffold: PH01000826
Strand: +

RegionStartEnd
gene260769269657
mRNA260769269657
exon260769262610
exon263901263931
exon264591264829
exon265175265340
exon265981266091
exon266500266687
exon267753267910
exon269077269251
exon269353269657
CDS261349262610
CDS263901263931
CDS264591264829
CDS265175265340
CDS265981266091
CDS266500266687
CDS267753267910
CDS269077269251
CDS269353269623

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02493.19MORN6687
PF02493.19MORN89110
PF02493.19MORN112132
PF02493.19MORN135157
PF02493.19MORN158180
PF02493.19MORN181202
PF02493.19MORN204222
PF02493.19MORN227243
PF01504.17PIP5K532859

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Phosphatidylinositol signaling system1-phosphatidylinositol-4-phosphate 5-kinase [EC:2.7.1.-]ko04070K00889
Endocytosis1-phosphatidylinositol-4-phosphate 5-kinase [EC:2.7.1.-]ko04144K00889
Inositol phosphate metabolism1-phosphatidylinositol-4-phosphate 5-kinase [EC:2.7.1.68]ko00562K00889

10.Gene Ontology

GO AccessionGO Annotation
GO:0005524ATP binding
GO:0016307phosphatidylinositol phosphate kinase activity
GO:00163081-phosphatidylinositol-4-phosphate 5-kinase activity
GO:0046488phosphatidylinositol metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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