PH01000829G0210's details annotation
1.Annotation
ICBR annotation: aspartic proteinase oryzasin-1 precursor, putative, expressed
Blast result AT5G42520 : 1.10E-68
Blast annotation: basic pentacysteine 6
2.Location
Scaffold: PH01000829
Strand: +
| Region | Start | End |
| gene | 164205 | 170855 |
| mRNA | 164205 | 170855 |
| exon | 164205 | 164316 |
| exon | 165781 | 165850 |
| exon | 166528 | 167393 |
| exon | 168150 | 168423 |
| exon | 168521 | 168634 |
| exon | 168760 | 168808 |
| exon | 169941 | 170855 |
| CDS | 164258 | 164316 |
| CDS | 165781 | 165850 |
| CDS | 166528 | 167393 |
| CDS | 168150 | 168423 |
| CDS | 168521 | 168634 |
| CDS | 168760 | 168808 |
| CDS | 169941 | 170065 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | BBR-BPC |
| Transcription_Regulator(from PlantTFDB) | BBR-BPC |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06217.11 | GAGA_bind | 21 | 335 |
| PF00026.22 | Asp | 333 | 440 |
| PF03489.16 | SapB_2 | 441 | 473 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004190 | aspartic-type endopeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.