Annotation of co-expression genes

PH01000829G0360's details annotation

1.Annotation

ICBR annotation: zinc finger family protein, putative, expressed

Blast result AT2G39720 : 5.70E-29
Blast annotation: RING-H2 finger C2A

2.Location

Scaffold: PH01000829
Strand: -

RegionStartEnd
gene252811255026
mRNA252811255026
exon252811255026
CDS253670254140

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000719NAK (from iTAK)
Glycerophospholipid_metabolism
coexpression networkCFinderM000750CO-like Transcription_Regulator(from PlantTFDB)
C2C2-CO-like Transcription_Regulator(from iTAK)
zinc ion binding,
intracellular,
Others Transcription_Regulator(from iTAK)
actin binding,
protein binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13639.5zf-RING_21254
PF06547.11DUF111770153

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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