Annotation of co-expression genes

PH01000832G0430's details annotation

1.Annotation

ICBR annotation: PHD-finger domain containing protein, expressed

Blast result AT2G37520 : 6.50E-82
Blast annotation: Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain

2.Location

Scaffold: PH01000832
Strand: +

RegionStartEnd
gene256502262271
mRNA256502262271
exon256502257626
exon258082258153
exon258231258461
exon258513258605
exon258912258958
exon259080259155
exon259238259297
exon259384259436
exon259519259685
exon259827260031
exon261138261195
exon261396261452
exon261599261844
exon262007262271
CDS256541257626
CDS258082258153
CDS258231258461
CDS258513258605
CDS258912258958
CDS259080259155
CDS259238259297
CDS259384259436
CDS259519259685
CDS259827260031
CDS261138261195
CDS261396261452
CDS261599261844
CDS262007262060

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF16135.4Jas345409
PF16135.4Jas508578

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.