PH01000832G0610's details annotation
1.Annotation
ICBR annotation: BBF1 - 2 Bric-a-Brac, Tramtrack, Broad Complex BTB domains with a F5/8 type C discoidin domain, expressed
Blast result AT2G30600 : 3.60E-45
Blast annotation: BTB/POZ domain-containing protein
2.Location
Scaffold: PH01000832
Strand: +
| Region | Start | End |
| gene | 385565 | 387402 |
| mRNA | 385565 | 387402 |
| exon | 385565 | 386442 |
| exon | 386893 | 386961 |
| exon | 387034 | 387402 |
| CDS | 386257 | 386442 |
| CDS | 386893 | 386961 |
| CDS | 387034 | 387267 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000062 | RLK-Pelle_LRR-XII-1 (from iTAK) cell adhesion, TRAF Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0007155 | cell adhesion |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.