PH01000836G0340's details annotation
1.Annotation
ICBR annotation: OsFBO8 - F-box and other domain containing protein, expressed
Blast result AT5G57360 : 0.00E+00
Blast annotation: Galactose oxidase/kelch repeat superfamily protein
2.Location
Scaffold: PH01000836
Strand: -
| Region | Start | End |
| gene | 221671 | 227028 |
| mRNA | 221671 | 227028 |
| exon | 221671 | 223988 |
| exon | 226705 | 227028 |
| CDS | 222353 | 223988 |
| CDS | 226705 | 226934 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13426.6 | PAS_9 | 49 | 148 |
| PF12937.6 | F-box-like | 203 | 244 |
| PF13418.5 | Kelch_4 | 294 | 344 |
| PF13418.5 | Kelch_4 | 345 | 395 |
| PF13415.5 | Kelch_3 | 410 | 459 |
| PF07646.14 | Kelch_2 | 518 | 565 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004871 | signal transducer activity |
| GO:0005515 | protein binding |
| GO:0007165 | signal transduction |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.