PH01000836G0520's details annotation
1.Annotation
ICBR annotation: protein phosphatase 2C, putative, expressed
Blast result AT4G31750 : 2.00E-130
Blast annotation: HOPW1-1-interacting 2
2.Location
Scaffold: PH01000836
Strand: -
| Region | Start | End |
| gene | 347828 | 350561 |
| mRNA | 347828 | 350561 |
| exon | 347828 | 348427 |
| exon | 348502 | 348576 |
| exon | 349067 | 349158 |
| exon | 349245 | 349331 |
| exon | 349553 | 349711 |
| exon | 349802 | 349900 |
| exon | 350025 | 350152 |
| exon | 350462 | 350561 |
| CDS | 348248 | 348427 |
| CDS | 348502 | 348576 |
| CDS | 349067 | 349158 |
| CDS | 349245 | 349331 |
| CDS | 349553 | 349711 |
| CDS | 349802 | 349900 |
| CDS | 350025 | 350152 |
| CDS | 350462 | 350493 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00481.20 | PP2C | 88 | 301 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004722 | protein serine/threonine phosphatase activity |
| GO:0006470 | protein dephosphorylation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.