PH01000836G0590's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G77840 : 8.00E-134
Blast annotation: Translation initiation factor IF2/IF5
2.Location
Scaffold: PH01000836
Strand: -
| Region | Start | End |
| gene | 387459 | 391155 |
| mRNA | 387459 | 391155 |
| exon | 387459 | 391155 |
| CDS | 387915 | 389294 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01873.16 | eIF-5_eIF-2B | 11 | 127 |
| PF02020.17 | W2 | 382 | 459 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA transport | translation initiation factor 5 | ko03013 | K03262 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003743 | translation initiation factor activity |
| GO:0005488 | binding |
| GO:0005515 | protein binding |
| GO:0006413 | translational initiation |
| GO:0016070 | RNA metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.