Annotation of co-expression genes

PH01000836G0660's details annotation

1.Annotation

ICBR annotation: GATA transcription factor 25, putative, expressed

Blast result AT1G51600 : 1.80E-45
Blast annotation: ZIM-LIKE 2

2.Location

Scaffold: PH01000836
Strand: -

RegionStartEnd
gene444348452795
mRNA444348452795
exon444348445697
exon445767445844
exon446247446302
exon446445446550
exon447019447025
exon447244447441
exon448226448350
exon448772448843
exon449575449680
exon450816450944
exon451048451160
exon451688452795
CDS445629445697
CDS445767445844
CDS446247446302
CDS446445446550
CDS447019447025
CDS447244447441
CDS448226448350
CDS448772448843
CDS449575449680
CDS450816450944
CDS451048451160
CDS451688452041

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)C2C2-GATA
Transcription_Regulator(from PlantTFDB)GATA

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF06200.13tify96118
PF06203.13CCT125167
PF00320.26GATA200235

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003700sequence-specific DNA binding transcription factor activity
GO:0005515protein binding
GO:0006355regulation of transcription, DNA-dependent
GO:0008270zinc ion binding
GO:0043565sequence-specific DNA binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.