PH01000838G0190's details annotation
1.Annotation
ICBR annotation: peptidase, T1 family, putative, expressed
Blast result AT3G60820 : 1.60E-96
Blast annotation: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
2.Location
Scaffold: PH01000838
Strand: +
| Region | Start | End |
| gene | 150511 | 155089 |
| mRNA | 150511 | 155089 |
| exon | 150511 | 151094 |
| exon | 151187 | 151294 |
| exon | 152528 | 152609 |
| exon | 153398 | 153527 |
| exon | 154080 | 154222 |
| exon | 154386 | 154472 |
| exon | 154527 | 155089 |
| CDS | 151054 | 151094 |
| CDS | 151187 | 151294 |
| CDS | 152528 | 152609 |
| CDS | 153398 | 153527 |
| CDS | 154080 | 154222 |
| CDS | 154386 | 154472 |
| CDS | 154527 | 154640 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000432 | TAZ Transcription_Regulator(from iTAK) transcription cofactor activity, histone acetyltransferase activity, threonine-type endopeptidase activity, endopeptidase activity, peptidyl-prolyl cis-trans isomerase activity, proteasome core complex, proteolysis involved in cellular protein catabolic process, Oxidative_phosphorylation Proteasome mRNA_surveillance_pathway |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00227.25 | Proteasome | 11 | 206 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Proteasome | 20S proteasome subunit beta 6 [EC:3.4.25.1] | ko03051 | K02732 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004175 | endopeptidase activity |
| GO:0004298 | threonine-type endopeptidase activity |
| GO:0005839 | proteasome core complex |
| GO:0051603 | proteolysis involved in cellular protein catabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.