Annotation of co-expression genes

PH01000839G0030's details annotation

1.Annotation

ICBR annotation: digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed

Blast result AT3G11670 : 0.00E+00
Blast annotation: UDP-Glycosyltransferase superfamily protein

2.Location

Scaffold: PH01000839
Strand: +

RegionStartEnd
gene1190315901
mRNA1190315901
exon1190312753
exon1327813365
exon1345513936
exon1403614302
exon1437514724
exon1482315901
CDS1260112753
CDS1327813365
CDS1345513936
CDS1403614302
CDS1437514724
CDS1482315354

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000974CMGC_CDKL-Os (from iTAK)
CAMTA Transcription_Regulator(from PlantTFDB)
CMGC_CDK-CRK7-CDK9 (from iTAK)
Glycerolipid_metabolism
coexpression networkCFinderM001500CAMTA Transcription_Regulator(from PlantTFDB)
Glycerolipid_metabolism
biosynthetic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00534.19Glycos_transf_1379482

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Glycerolipid metabolismdigalactosyldiacylglycerol synthase [EC:2.4.1.241]ko00561K09480

10.Gene Ontology

GO AccessionGO Annotation
GO:0009058biosynthetic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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